STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ44733.1Two-component system, NarL family, sensor histidine kinase DegS. (378 aa)    
Predicted Functional Partners:
SJZ48860.1
Two component transcriptional regulator, LuxR family.
 0.952
SJZ83387.1
Two component transcriptional regulator, LuxR family.
 0.952
SJZ89560.1
Two component transcriptional regulator, LuxR family.
 0.948
SJZ59331.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.823
SJZ44535.1
Pilus assembly protein CpaE.
 
 0.820
SJZ40910.1
Chemotaxis protein methyltransferase CheR.
   
  0.739
cheB
Two-component system, chemotaxis family, response regulator CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
   
  0.709
SJZ49540.1
Chemotaxis protein methyltransferase CheR.
   
  0.692
SJZ44769.1
CRP/FNR family transcriptional regulator, cyclic AMP receptor protein.
   
 
 0.584
SJZ75960.1
Hypothetical protein.
  
     0.582
Your Current Organism:
Selenihalanaerobacter shriftii
NCBI taxonomy Id: 142842
Other names: ATCC BAA-73, S. shriftii, Selenihalanaerobacter shriftii Switzer Blum et al. 2001, Selenohalobacter shriftii, strain DSSe-1
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