STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ66391.1Transcriptional regulator, AsnC family. (162 aa)    
Predicted Functional Partners:
SJZ66415.1
Putative heme d1 biosynthesis radical SAM protein NirJ2.
 
 0.997
SJZ66363.1
Transcriptional regulator, AsnC family.
  
 
0.992
SJZ66523.1
Putative heme d1 biosynthesis radical SAM protein NirJ1.
 
 0.976
SJZ66573.1
Uroporphyrinogen III methyltransferase / synthase.
 
 
 0.896
SKA05435.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.889
SJZ66655.1
Precorrin-2 dehydrogenase.
 
  
 0.872
SJZ66494.1
Porphobilinogen synthase; Belongs to the ALAD family.
     
 0.825
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
     
 0.715
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
   
 
 0.694
SJZ52054.1
Nitric oxide reductase subunit C.
  
    0.682
Your Current Organism:
Selenihalanaerobacter shriftii
NCBI taxonomy Id: 142842
Other names: ATCC BAA-73, S. shriftii, Selenihalanaerobacter shriftii Switzer Blum et al. 2001, Selenohalobacter shriftii, strain DSSe-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.