STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ93203.1Hypothetical protein. (223 aa)    
Predicted Functional Partners:
SJZ93173.1
CcmD family protein.
       0.689
SJZ93141.1
Heme exporter protein A.
       0.581
SJZ93148.1
Heme exporter protein B.
       0.581
SJZ93156.1
Heme exporter protein C.
       0.581
SJZ93215.1
Hypothetical protein.
       0.553
SJZ93129.1
Hypothetical protein.
       0.533
SJZ93119.1
Cytochrome c-type biogenesis protein CcmF.
       0.496
SJZ93107.1
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
       0.451
SJZ93226.1
Trk system potassium uptake protein TrkH.
       0.417
SJZ93241.1
Trk system potassium uptake protein TrkA.
       0.405
Your Current Organism:
Selenihalanaerobacter shriftii
NCBI taxonomy Id: 142842
Other names: ATCC BAA-73, S. shriftii, Selenihalanaerobacter shriftii Switzer Blum et al. 2001, Selenohalobacter shriftii, strain DSSe-1
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