STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA06017.1Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB. (327 aa)    
Predicted Functional Partners:
SKA06043.1
CoA-substrate-specific enzyme activase, putative.
 0.997
SJZ48759.1
CoA-substrate-specific enzyme activase, putative.
 0.903
SJZ62624.1
CoA-substrate-specific enzyme activase, putative.
 0.902
SJZ91648.1
CO or xanthine dehydrogenase, Mo-binding subunit.
    
  0.710
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.665
queE
7-carboxy-7-deazaguanine synthase; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
 
    0.577
SJZ71212.1
Hypothetical protein.
  
     0.566
SJZ37951.1
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase.
  
    0.517
folE
GTP cyclohydrolase I.
  
    0.507
SKA06872.1
EamA-like transporter family protein.
  
     0.438
Your Current Organism:
Selenihalanaerobacter shriftii
NCBI taxonomy Id: 142842
Other names: ATCC BAA-73, S. shriftii, Selenihalanaerobacter shriftii Switzer Blum et al. 2001, Selenohalobacter shriftii, strain DSSe-1
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