STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA11680.1Hypothetical protein. (224 aa)    
Predicted Functional Partners:
SKA11689.1
2-oxoglutarate ferredoxin oxidoreductase subunit delta.
 
    0.898
SJZ36122.1
Outer membrane receptor for ferrienterochelin and colicins.
    
 
 0.749
SKA11615.1
2-oxoglutarate ferredoxin oxidoreductase subunit gamma.
 
     0.728
SJZ85104.1
2-oxoglutarate ferredoxin oxidoreductase subunit delta.
 
     0.723
SKA12466.1
2-oxoglutarate ferredoxin oxidoreductase, delta subunit.
 
    0.719
SJZ80047.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
  
 
 0.679
SJZ80093.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
  
 
 0.679
SKA11701.1
Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg.
 
     0.677
SJZ30495.1
Spore coat associated protein JA (CotJA).
    
 
 0.657
SJZ61811.1
2-oxoglutarate ferredoxin oxidoreductase subunit gamma.
 
     0.629
Your Current Organism:
Selenihalanaerobacter shriftii
NCBI taxonomy Id: 142842
Other names: ATCC BAA-73, S. shriftii, Selenihalanaerobacter shriftii Switzer Blum et al. 2001, Selenohalobacter shriftii, strain DSSe-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.