STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA11835.1Alanine dehydrogenase. (160 aa)    
Predicted Functional Partners:
SKA06302.1
Alanine dehydrogenase.
 
     0.976
SJZ77112.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.802
SKA11846.1
Phosphate butyryltransferase.
       0.492
SJZ32219.1
Aspartate aminotransferase.
     
 0.459
SJZ88841.1
Aspartate 4-decarboxylase.
     
 0.459
SJZ30330.1
Aspartate aminotransferase.
     
 0.458
SKA05589.1
Aspartate aminotransferase.
     
 0.458
SKA11899.1
Threonine dehydratase.
    
 0.433
SKA11856.1
Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains.
       0.415
Your Current Organism:
Selenihalanaerobacter shriftii
NCBI taxonomy Id: 142842
Other names: ATCC BAA-73, S. shriftii, Selenihalanaerobacter shriftii Switzer Blum et al. 2001, Selenohalobacter shriftii, strain DSSe-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.