STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001956915_01587Unannotated protein. (286 aa)    
Predicted Functional Partners:
GCA_001956915_01651
Unannotated protein.
  
  
 
0.931
GCA_001956915_03397
Unannotated protein.
  
  
0.850
GCA_001956915_03537
Unannotated protein.
  
  
 
0.821
GCA_001956915_03713
Unannotated protein.
   
  
 0.706
GCA_001956915_01663
Unannotated protein.
  
  
 0.704
GCA_001956915_02677
Unannotated protein.
  
  
 0.538
GCA_001956915_01586
Unannotated protein.
       0.530
GCA_001956915_03808
Unannotated protein.
  
  
 0.490
GCA_001956915_02820
Unannotated protein.
       0.448
GCA_001956915_00997
Unannotated protein.
      
 0.437
Your Current Organism:
Intrasporangium flavum
NCBI taxonomy Id: 1428657
Other names: DSM 29621, I. flavum, Intrasporangium flavum (Azman et al. 2016) Nouioui et al. 2018, MCCC 1K00454, Monashia flava, Monashia flava Azman et al. 2016, NBRC 110749, Terrabacter sp. MUSC 78, strain MUSC 78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.