STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001956915_02166Unannotated protein. (81 aa)    
Predicted Functional Partners:
GCA_001956915_03150
Unannotated protein.
    
 0.884
GCA_001956915_02165
Unannotated protein.
    
 0.818
GCA_001956915_03186
Unannotated protein.
     
 0.742
GCA_001956915_00733
Unannotated protein.
    
 0.654
GCA_001956915_03394
Unannotated protein.
    
 0.654
GCA_001956915_02169
Unannotated protein.
    
  0.624
GCA_001956915_02164
Unannotated protein.
       0.586
GCA_001956915_02163
Unannotated protein.
       0.584
GCA_001956915_02162
Unannotated protein.
       0.551
GCA_001956915_03252
Unannotated protein.
    
 0.493
Your Current Organism:
Intrasporangium flavum
NCBI taxonomy Id: 1428657
Other names: DSM 29621, I. flavum, Intrasporangium flavum (Azman et al. 2016) Nouioui et al. 2018, MCCC 1K00454, Monashia flava, Monashia flava Azman et al. 2016, NBRC 110749, Terrabacter sp. MUSC 78, strain MUSC 78
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