STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001956915_03230Unannotated protein. (235 aa)    
Predicted Functional Partners:
GCA_001956915_02655
Unannotated protein.
 
 
 0.995
GCA_001956915_03229
Unannotated protein.
  
    0.871
GCA_001956915_03232
Unannotated protein.
  
  
 0.859
GCA_001956915_03231
Unannotated protein.
 
     0.799
GCA_001956915_02926
Unannotated protein.
  
 
 0.762
GCA_001956915_03277
Unannotated protein.
 
 
 0.723
GCA_001956915_02649
Unannotated protein.
 
   
 0.714
GCA_001956915_02654
Unannotated protein.
    
 0.706
GCA_001956915_02658
Unannotated protein.
   
 0.698
GCA_001956915_02927
Unannotated protein.
   
 
 0.696
Your Current Organism:
Intrasporangium flavum
NCBI taxonomy Id: 1428657
Other names: DSM 29621, I. flavum, Intrasporangium flavum (Azman et al. 2016) Nouioui et al. 2018, MCCC 1K00454, Monashia flava, Monashia flava Azman et al. 2016, NBRC 110749, Terrabacter sp. MUSC 78, strain MUSC 78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.