STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001956915_03685Unannotated protein. (399 aa)    
Predicted Functional Partners:
GCA_001956915_03684
Unannotated protein.
 
 
  0.861
GCA_001956915_03686
Unannotated protein.
  
    0.785
GCA_001956915_00154
Unannotated protein.
   
 0.782
GCA_001956915_02837
Unannotated protein.
   
 0.782
GCA_001956915_00153
Unannotated protein.
   
 0.779
GCA_001956915_02907
Unannotated protein.
   
  0.766
GCA_001956915_01306
Unannotated protein.
    
   0.747
GCA_001956915_03683
Unannotated protein.
  
 
  0.662
GCA_001956915_00697
Unannotated protein.
  
     0.649
GCA_001956915_03005
Unannotated protein.
  
 0.642
Your Current Organism:
Intrasporangium flavum
NCBI taxonomy Id: 1428657
Other names: DSM 29621, I. flavum, Intrasporangium flavum (Azman et al. 2016) Nouioui et al. 2018, MCCC 1K00454, Monashia flava, Monashia flava Azman et al. 2016, NBRC 110749, Terrabacter sp. MUSC 78, strain MUSC 78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.