STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001885685_00108Unannotated protein. (92 aa)    
Predicted Functional Partners:
GCA_001885685_02099
Unannotated protein.
  
     0.632
GCA_001885685_00112
Unannotated protein.
  
   0.622
bamB
Unannotated protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.614
GCA_001885685_00110
Unannotated protein.
     
 0.600
GCA_001885685_00109
Unannotated protein.
       0.594
GCA_001885685_00113
Unannotated protein.
  
    0.590
GCA_001885685_00111
Unannotated protein.
  
    0.588
GCA_001885685_00114
Unannotated protein.
       0.586
GCA_001885685_00115
Unannotated protein.
   
   0.544
GCA_001885685_01119
Unannotated protein; Belongs to the flagella basal body rod proteins family.
    
   0.495
Your Current Organism:
Pseudomonas hussainii
NCBI taxonomy Id: 1429083
Other names: BCRC 80696, JCM 19513, P. hussainii, Pseudomonas hussainii Hameed et al. 2014, Pseudomonas sp. CC-AMH-11, Pseudomonas sp. CC-AMHZ-5, strain CC-AMH-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.