STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001885685_01275Unannotated protein. (308 aa)    
Predicted Functional Partners:
GCA_001885685_01276
Unannotated protein.
 
 
 0.998
GCA_001885685_01274
Unannotated protein.
 
  
 0.989
GCA_001885685_01277
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.918
GCA_001885685_01273
Unannotated protein; Belongs to the peptidase S1C family.
  
  
 0.705
recO
Unannotated protein; Involved in DNA repair and RecF pathway recombination.
 
    0.638
GCA_001885685_02109
Unannotated protein.
  
     0.584
GCA_001885685_01270
Unannotated protein.
 
     0.539
GCA_001885685_03071
Unannotated protein.
  
     0.489
GCA_001885685_01906
Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.487
GCA_001885685_02510
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.473
Your Current Organism:
Pseudomonas hussainii
NCBI taxonomy Id: 1429083
Other names: BCRC 80696, JCM 19513, P. hussainii, Pseudomonas hussainii Hameed et al. 2014, Pseudomonas sp. CC-AMH-11, Pseudomonas sp. CC-AMHZ-5, strain CC-AMH-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.