STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RirG_039590Uncharacterized protein. (84 aa)    
Predicted Functional Partners:
RirG_061830
Uncharacterized protein.
   
 0.996
RirG_005190
Uncharacterized protein; Belongs to the complex I LYR family.
   
 0.994
RirG_028340
L51_S25_CI-B8 domain-containing protein.
   
 0.991
RirG_237630
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
   
 0.989
RirG_089100
Cytochrome c oxidase subunit VI.
   
 0.985
RirG_049620
COX2_CUA domain-containing protein.
   
 0.969
RirG_126800
Cytochrome c oxidase subunit Va.
   
 0.966
RirG_039970
Cytochrome c oxidase subunit IV.
   
 0.957
RirG_195550
Uncharacterized protein; Belongs to the complex I LYR family.
   
 0.955
RirG_112630
Uncharacterized protein.
   
 0.951
Your Current Organism:
Rhizophagus irregularis DAOM
NCBI taxonomy Id: 1432141
Other names: R. irregularis DAOM 197198w, Rhizophagus irregularis DAOM 197198w, Rhizophagus irregularis DAOM197198w
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