STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RirG_255420Vhs1p; Belongs to the protein kinase superfamily. (394 aa)    
Predicted Functional Partners:
RirG_203020
RRM domain-containing protein.
    
 
 0.810
RirG_082710
Mdg1p.
    
 0.749
RirG_063670
Sip2p.
    
 0.749
RirG_266470
DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.
   
  0.726
RirG_103510
Cdc31p.
    
 0.709
RirG_258560
Atg1p.
  
 
0.659
RirG_214720
Kog1p.
    
 0.656
RirG_022730
Tpk1p; Belongs to the protein kinase superfamily.
  
0.642
RirG_267100
Hym1p.
    
 0.640
RirG_035270
Sds23p.
   
 0.640
Your Current Organism:
Rhizophagus irregularis DAOM
NCBI taxonomy Id: 1432141
Other names: R. irregularis DAOM 197198w, Rhizophagus irregularis DAOM 197198w, Rhizophagus irregularis DAOM197198w
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.