STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM27843.1phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein. (243 aa)    
Predicted Functional Partners:
SHM27870.1
phospholipid/cholesterol/gamma-HCH transport system permease protein; Belongs to the MlaE permease family.
 0.999
SHM27818.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.998
SHM31664.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.990
SHM48022.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
  
 0.969
SHM31634.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
  
  
 
0.833
SHM69432.1
ABC-2 type transport system permease protein.
      0.779
SHM90232.1
ABC-2 type transport system ATP-binding protein.
  
 
0.740
SHM69404.1
ABC-2 type transport system permease protein.
      0.467
rpsE
SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.435
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
   0.422
Your Current Organism:
Salegentibacter salegens
NCBI taxonomy Id: 143223
Other names: ACAM 48, ATCC 51522, CCUG 33447, CIP 104041, DSM 5424, Flavobacterium salegens, LMG 13193, LMG:13193, S. salegens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.