STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM42746.1Hypothetical protein. (343 aa)    
Predicted Functional Partners:
SHM42714.1
Type IV secretion-system coupling protein DNA-binding domain-containing protein.
 
     0.952
SHM42778.1
Neuroendocrine-specific golgi protein P55 (NESP55).
 
     0.946
SHM41337.1
Hypothetical protein.
 
     0.797
SHM69742.1
Hypothetical protein.
 
     0.789
SHM41900.1
Protein of unknown function.
  
     0.774
SHM41933.1
Protein of unknown function.
  
     0.774
SHM41967.1
Hypothetical protein.
  
     0.774
SHM41998.1
Hypothetical protein.
  
     0.774
SHM42035.1
Hypothetical protein.
  
     0.774
SHM42076.1
Bacteroides conjugation system ATPase, TraG family.
  
     0.774
Your Current Organism:
Salegentibacter salegens
NCBI taxonomy Id: 143223
Other names: ACAM 48, ATCC 51522, CCUG 33447, CIP 104041, DSM 5424, Flavobacterium salegens, LMG 13193, LMG:13193, S. salegens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.