Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM47340.1 | SHM47369.1 | SAMN05878281_0795 | SAMN05878281_0796 | Hypothetical protein. | Hypothetical protein. | 0.495 |
SHM47340.1 | SHM47397.1 | SAMN05878281_0795 | SAMN05878281_0797 | Hypothetical protein. | Protein of unknown function. | 0.495 |
SHM47340.1 | SHM57963.1 | SAMN05878281_0795 | SAMN05878281_1162 | Hypothetical protein. | Putative membrane protein. | 0.504 |
SHM47340.1 | SHM64661.1 | SAMN05878281_0795 | SAMN05878281_1420 | Hypothetical protein. | RNA polymerase Rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.799 |
SHM47340.1 | SHM71500.1 | SAMN05878281_0795 | SAMN05878281_1685 | Hypothetical protein. | Por secretion system C-terminal sorting domain-containing protein. | 0.575 |
SHM47340.1 | SHM82677.1 | SAMN05878281_0795 | SAMN05878281_2131 | Hypothetical protein. | Hypothetical protein. | 0.522 |
SHM47340.1 | rpoA | SAMN05878281_0795 | SAMN05878281_0333 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.801 |
SHM47340.1 | rpoB | SAMN05878281_0795 | SAMN05878281_3136 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.811 |
SHM47340.1 | rpoC | SAMN05878281_0795 | SAMN05878281_3137 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.842 |
SHM47340.1 | rpsO | SAMN05878281_0795 | SAMN05878281_1697 | Hypothetical protein. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.491 |
SHM47369.1 | SHM47340.1 | SAMN05878281_0796 | SAMN05878281_0795 | Hypothetical protein. | Hypothetical protein. | 0.495 |
SHM47369.1 | SHM47397.1 | SAMN05878281_0796 | SAMN05878281_0797 | Hypothetical protein. | Protein of unknown function. | 0.961 |
SHM47369.1 | SHM64661.1 | SAMN05878281_0796 | SAMN05878281_1420 | Hypothetical protein. | RNA polymerase Rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.576 |
SHM47369.1 | rpoA | SAMN05878281_0796 | SAMN05878281_0333 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.521 |
SHM47369.1 | rpoB | SAMN05878281_0796 | SAMN05878281_3136 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.601 |
SHM47369.1 | rpoC | SAMN05878281_0796 | SAMN05878281_3137 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.622 |
SHM47397.1 | SHM47340.1 | SAMN05878281_0797 | SAMN05878281_0795 | Protein of unknown function. | Hypothetical protein. | 0.495 |
SHM47397.1 | SHM47369.1 | SAMN05878281_0797 | SAMN05878281_0796 | Protein of unknown function. | Hypothetical protein. | 0.961 |
SHM57963.1 | SHM47340.1 | SAMN05878281_1162 | SAMN05878281_0795 | Putative membrane protein. | Hypothetical protein. | 0.504 |
SHM57963.1 | SHM71500.1 | SAMN05878281_1162 | SAMN05878281_1685 | Putative membrane protein. | Por secretion system C-terminal sorting domain-containing protein. | 0.486 |
page 1 of 3