STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM47963.1Hypothetical protein. (908 aa)    
Predicted Functional Partners:
SHM47929.1
2-iminobutanoate/2-iminopropanoate deaminase.
       0.806
SHM71761.1
Surface antigen.
  
  
 0.746
SHN06977.1
Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
   
 0.741
SHM76974.1
Membrane protein YfhO.
  
     0.729
SHM28606.1
Hypothetical protein.
  
    0.709
SHM93364.1
Ig-like domain-containing protein.
  
     0.704
SHM57830.1
Lipopolysaccharide export system permease protein.
 
 
 0.703
SHM65617.1
Lipopolysaccharide export system permease protein.
 
 
 0.679
SHM96109.1
Beta-barrel assembly machine subunit BamA.
  
  
 0.633
SHM28314.1
Tetratricopeptide repeat-containing protein.
  
   
 0.627
Your Current Organism:
Salegentibacter salegens
NCBI taxonomy Id: 143223
Other names: ACAM 48, ATCC 51522, CCUG 33447, CIP 104041, DSM 5424, Flavobacterium salegens, LMG 13193, LMG:13193, S. salegens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.