STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM51342.1Hypothetical protein. (1330 aa)    
Predicted Functional Partners:
SHM51372.1
Hypothetical protein.
       0.791
SHM51594.1
Protein of unknown function.
  
    0.775
SHM28075.1
Hypothetical protein.
  
     0.730
SHN01395.1
Predicted nuclease of the RNAse H fold, HicB family.
  
     0.682
SHM48640.1
Hypothetical protein.
  
     0.663
SHM41365.1
Hypothetical protein.
  
     0.599
SHM36682.1
PAS domain S-box-containing protein.
  
     0.597
SHM51620.1
cysteinyl-tRNA synthetase, unknown class.
 
     0.589
SHN04736.1
Nucleotide-binding universal stress protein, UspA family.
  
     0.585
SHM45378.1
Galactose binding lectin domain-containing protein.
  
     0.577
Your Current Organism:
Salegentibacter salegens
NCBI taxonomy Id: 143223
Other names: ACAM 48, ATCC 51522, CCUG 33447, CIP 104041, DSM 5424, Flavobacterium salegens, LMG 13193, LMG:13193, S. salegens
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.