STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM54304.1Transcriptional regulator, PadR family. (114 aa)    
Predicted Functional Partners:
SHM54335.1
Phage shock protein C (PspC) family protein.
 
     0.900
SHM54273.1
Hypothetical protein.
       0.832
SHM54357.1
Hypothetical protein.
       0.773
SHM54388.1
Putative auto-transporter adhesin, head GIN domain.
       0.594
SHM54246.1
Protein of unknown function.
       0.577
SHM54222.1
TIGR00266 family protein.
       0.541
SHM54418.1
Hypothetical protein.
       0.478
Your Current Organism:
Salegentibacter salegens
NCBI taxonomy Id: 143223
Other names: ACAM 48, ATCC 51522, CCUG 33447, CIP 104041, DSM 5424, Flavobacterium salegens, LMG 13193, LMG:13193, S. salegens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.