STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM58239.1Hypothetical protein. (222 aa)    
Predicted Functional Partners:
SHM58265.1
GH3 auxin-responsive promoter.
  
     0.763
SHM80212.1
Conserved hypothetical protein.
  
     0.652
SHN06679.1
Conserved hypothetical protein.
  
     0.585
SHM80191.1
Conserved hypothetical protein.
  
     0.582
SHM83119.1
Hypothetical protein.
  
     0.572
SHM68276.1
Protein of unknown function.
  
     0.541
SHM45672.1
Family of unknown function; Manually curated.
  
     0.507
SHM58202.1
Protein of unknown function.
       0.484
SHM96790.1
Protein of unknown function.
  
     0.472
SHM45706.1
Outer membrane protein assembly factor BamA.
  
     0.461
Your Current Organism:
Salegentibacter salegens
NCBI taxonomy Id: 143223
Other names: ACAM 48, ATCC 51522, CCUG 33447, CIP 104041, DSM 5424, Flavobacterium salegens, LMG 13193, LMG:13193, S. salegens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.