STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM67178.1Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family. (278 aa)    
Predicted Functional Partners:
SHM67201.1
Hypothetical protein.
 
     0.615
SHM37123.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.608
SHM83414.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.608
SHM85267.1
Cysteine desulfurase family protein, VC1184 subfamily.
    
   0.608
SHM56082.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
  
    0.553
SHM67233.1
Transcriptional regulator.
       0.536
SHM40123.1
Phospholipase/Carboxylesterase.
 
     0.489
SHM40092.1
Hypothetical protein.
 
     0.473
SHM40062.1
Hypothetical protein.
 
     0.447
SHM40240.1
Carboxylesterase family protein.
 
     0.439
Your Current Organism:
Salegentibacter salegens
NCBI taxonomy Id: 143223
Other names: ACAM 48, ATCC 51522, CCUG 33447, CIP 104041, DSM 5424, Flavobacterium salegens, LMG 13193, LMG:13193, S. salegens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.