Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM60772.1 | SHM86902.1 | SAMN05878281_1268 | SAMN05878281_2335 | ATPase components of ABC transporters with duplicated ATPase domains. | SM-20-related protein. | 0.450 |
SHM60772.1 | rpsL | SAMN05878281_1268 | SAMN05878281_0303 | ATPase components of ABC transporters with duplicated ATPase domains. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.807 |
SHM86902.1 | SHM60772.1 | SAMN05878281_2335 | SAMN05878281_1268 | SM-20-related protein. | ATPase components of ABC transporters with duplicated ATPase domains. | 0.450 |
SHM86902.1 | SHM86927.1 | SAMN05878281_2335 | SAMN05878281_2336 | SM-20-related protein. | 6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase. | 0.592 |
SHM86902.1 | SHM91225.1 | SAMN05878281_2335 | SAMN05878281_2528 | SM-20-related protein. | Coproporphyrinogen oxidase. | 0.550 |
SHM86902.1 | SHM95308.1 | SAMN05878281_2335 | SAMN05878281_2720 | SM-20-related protein. | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | 0.784 |
SHM86902.1 | SHM97400.1 | SAMN05878281_2335 | SAMN05878281_2822 | SM-20-related protein. | ATP-binding cassette, subfamily F, member 3. | 0.450 |
SHM86902.1 | SHN01737.1 | SAMN05878281_2335 | SAMN05878281_3056 | SM-20-related protein. | ATP-binding cassette, subfamily F, uup. | 0.450 |
SHM86902.1 | proC | SAMN05878281_2335 | SAMN05878281_0125 | SM-20-related protein. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.476 |
SHM86902.1 | pyrG | SAMN05878281_2335 | SAMN05878281_1178 | SM-20-related protein. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.491 |
SHM86902.1 | rpsL | SAMN05878281_2335 | SAMN05878281_0303 | SM-20-related protein. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.459 |
SHM86902.1 | tuf | SAMN05878281_2335 | SAMN05878281_3128 | SM-20-related protein. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.784 |
SHM86927.1 | SHM86902.1 | SAMN05878281_2336 | SAMN05878281_2335 | 6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase. | SM-20-related protein. | 0.592 |
SHM91225.1 | SHM86902.1 | SAMN05878281_2528 | SAMN05878281_2335 | Coproporphyrinogen oxidase. | SM-20-related protein. | 0.550 |
SHM95308.1 | SHM86902.1 | SAMN05878281_2720 | SAMN05878281_2335 | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | SM-20-related protein. | 0.784 |
SHM95308.1 | rpsL | SAMN05878281_2720 | SAMN05878281_0303 | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.956 |
SHM97400.1 | SHM86902.1 | SAMN05878281_2822 | SAMN05878281_2335 | ATP-binding cassette, subfamily F, member 3. | SM-20-related protein. | 0.450 |
SHM97400.1 | rpsL | SAMN05878281_2822 | SAMN05878281_0303 | ATP-binding cassette, subfamily F, member 3. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.807 |
SHN01737.1 | SHM86902.1 | SAMN05878281_3056 | SAMN05878281_2335 | ATP-binding cassette, subfamily F, uup. | SM-20-related protein. | 0.450 |
SHN01737.1 | rpsL | SAMN05878281_3056 | SAMN05878281_0303 | ATP-binding cassette, subfamily F, uup. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.807 |
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