STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM97168.1Regulatory protein, Fis family. (425 aa)    
Predicted Functional Partners:
SHM61664.1
PAS domain S-box-containing protein.
  
 0.983
SHM27901.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.962
SHM89880.1
PAS domain S-box-containing protein.
  
 0.916
SHM92547.1
AraC-type DNA-binding protein.
 
 0.886
SHM74349.1
PAS domain S-box-containing protein.
  
 0.867
SHM92594.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  
 0.867
SHM69917.1
Hypothetical protein.
  
 0.850
SHM81975.1
RNA polymerase, sigma 54 subunit, RpoN/SigL.
 
  
 0.834
SHM26980.1
PAS domain S-box-containing protein.
   
 0.815
SHN07455.1
Hypothetical protein.
  
 0.814
Your Current Organism:
Salegentibacter salegens
NCBI taxonomy Id: 143223
Other names: ACAM 48, ATCC 51522, CCUG 33447, CIP 104041, DSM 5424, Flavobacterium salegens, LMG 13193, LMG:13193, S. salegens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.