STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM97637.1Two-component sensor histidine kinase, contains HisKA and HATPase domains. (1013 aa)    
Predicted Functional Partners:
SHM89880.1
PAS domain S-box-containing protein.
   
 0.966
SHM61664.1
PAS domain S-box-containing protein.
   
 0.955
SHM27901.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
   
 0.948
SHM97613.1
Two component transcriptional regulator, LytTR family.
 
  
  0.945
SHM74349.1
PAS domain S-box-containing protein.
   
 0.889
SHM79573.1
PAS domain S-box-containing protein.
   
 0.794
SHM83996.1
PAS fold-containing protein.
   
 0.792
SHN07455.1
Hypothetical protein.
   
 0.782
SHM94691.1
Hypothetical protein.
   
 0.774
SHN03207.1
Signal transduction histidine kinase.
   
 0.774
Your Current Organism:
Salegentibacter salegens
NCBI taxonomy Id: 143223
Other names: ACAM 48, ATCC 51522, CCUG 33447, CIP 104041, DSM 5424, Flavobacterium salegens, LMG 13193, LMG:13193, S. salegens
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