STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM98961.1TRAP-type C4-dicarboxylate transport system, small permease component. (158 aa)    
Predicted Functional Partners:
SHM98936.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 
 0.996
SHM98977.1
TRAP transporter, DctM subunit.
 
 0.990
SHM41028.1
TRAP transporter, DctM subunit.
 
 0.960
SHM40968.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.854
SHM98913.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
       0.781
uxaC-3
D-glucuronate isomerase.
  
    0.508
SHM98893.1
2-dehydro-3-deoxygluconokinase.
       0.502
SHM98855.1
Beta-glucosidase.
  
    0.451
Your Current Organism:
Salegentibacter salegens
NCBI taxonomy Id: 143223
Other names: ACAM 48, ATCC 51522, CCUG 33447, CIP 104041, DSM 5424, Flavobacterium salegens, LMG 13193, LMG:13193, S. salegens
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