STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS38205.1O-antigen ligase. (419 aa)    
Predicted Functional Partners:
SIS38191.1
Hypothetical protein.
 
  
 0.919
SIS38213.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.910
SIS38183.1
Hypothetical protein.
 
     0.905
SIS37127.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
  
  
 0.828
SIS38171.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
  
  
 0.797
SIS38198.1
Hypothetical protein.
       0.774
SIS81728.1
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.772
SIS73589.1
Antitoxin component YwqK of the YwqJK toxin-antitoxin module.
  
     0.768
SIT00013.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.768
SIS38176.1
Glycosyltransferase involved in cell wall bisynthesis.
  
  
 0.764
Your Current Organism:
Zobellia uliginosa
NCBI taxonomy Id: 143224
Other names: ACAM 538, ATCC 14397, Agarbacterium uliginosum, CCUG 33448, CECT 4277, CIP 104808, Cellulophaga uliginosa, Cytophaga uliginosa, DSM 2061, Flavibacterium uliginosum, Flavobacterium uglinosum, Flavobacterium uliginosum, IFO 14962, JCM 21152, LMG 3809, LMG:3809, NBRC 14962, Z. uliginosa, strain ZoBell 553
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.