Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIS63309.1 | SIS83310.1 | SAMN05421766_10334 | SAMN05421766_104245 | Phage shock protein C (PspC) family protein. | Putative membrane protein. | 0.836 |
SIS83295.1 | SIS83310.1 | SAMN05421766_104244 | SAMN05421766_104245 | Trigger factor. | Putative membrane protein. | 0.625 |
SIS83295.1 | SIS83353.1 | SAMN05421766_104244 | SAMN05421766_104248 | Trigger factor. | CBS domain-containing protein. | 0.456 |
SIS83295.1 | clpP | SAMN05421766_104244 | SAMN05421766_104243 | Trigger factor. | ATP-dependent Clp protease, protease subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.742 |
SIS83295.1 | pdxJ | SAMN05421766_104244 | SAMN05421766_104247 | Trigger factor. | Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.421 |
SIS83310.1 | SIS63309.1 | SAMN05421766_104245 | SAMN05421766_10334 | Putative membrane protein. | Phage shock protein C (PspC) family protein. | 0.836 |
SIS83310.1 | SIS83295.1 | SAMN05421766_104245 | SAMN05421766_104244 | Putative membrane protein. | Trigger factor. | 0.625 |
SIS83310.1 | SIS83324.1 | SAMN05421766_104245 | SAMN05421766_104246 | Putative membrane protein. | Pimeloyl-ACP methyl ester carboxylesterase. | 0.562 |
SIS83310.1 | SIS83353.1 | SAMN05421766_104245 | SAMN05421766_104248 | Putative membrane protein. | CBS domain-containing protein. | 0.437 |
SIS83310.1 | SIS95800.1 | SAMN05421766_104245 | SAMN05421766_105209 | Putative membrane protein. | Phage shock protein C (PspC) family protein. | 0.784 |
SIS83310.1 | clpP | SAMN05421766_104245 | SAMN05421766_104243 | Putative membrane protein. | ATP-dependent Clp protease, protease subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.468 |
SIS83310.1 | pdxJ | SAMN05421766_104245 | SAMN05421766_104247 | Putative membrane protein. | Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.578 |
SIS83324.1 | SIS83310.1 | SAMN05421766_104246 | SAMN05421766_104245 | Pimeloyl-ACP methyl ester carboxylesterase. | Putative membrane protein. | 0.562 |
SIS83324.1 | SIS83353.1 | SAMN05421766_104246 | SAMN05421766_104248 | Pimeloyl-ACP methyl ester carboxylesterase. | CBS domain-containing protein. | 0.649 |
SIS83324.1 | pdxJ | SAMN05421766_104246 | SAMN05421766_104247 | Pimeloyl-ACP methyl ester carboxylesterase. | Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.799 |
SIS83353.1 | SIS83295.1 | SAMN05421766_104248 | SAMN05421766_104244 | CBS domain-containing protein. | Trigger factor. | 0.456 |
SIS83353.1 | SIS83310.1 | SAMN05421766_104248 | SAMN05421766_104245 | CBS domain-containing protein. | Putative membrane protein. | 0.437 |
SIS83353.1 | SIS83324.1 | SAMN05421766_104248 | SAMN05421766_104246 | CBS domain-containing protein. | Pimeloyl-ACP methyl ester carboxylesterase. | 0.649 |
SIS83353.1 | pdxJ | SAMN05421766_104248 | SAMN05421766_104247 | CBS domain-containing protein. | Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.650 |
SIS95800.1 | SIS83310.1 | SAMN05421766_105209 | SAMN05421766_104245 | Phage shock protein C (PspC) family protein. | Putative membrane protein. | 0.784 |
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