STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS89028.1Type IX secretion system membrane protein, PorP/SprF family. (313 aa)    
Predicted Functional Partners:
SIS88991.1
Outer membrane protein OmpA.
 
     0.851
SIS49372.1
WD40-like Beta Propeller Repeat.
 
     0.766
SIS96132.1
Outer membrane protein OmpA.
 
     0.765
SIS38329.1
WD40-like Beta Propeller Repeat.
  
     0.741
SIT16647.1
WD40-like Beta Propeller Repeat.
  
     0.737
SIT05047.1
Outer membrane protein OmpA.
  
     0.723
SIS83738.1
Outer membrane protein OmpA.
 
     0.718
SIS40562.1
Protein involved in gliding motility GldD.
  
     0.707
SIS67942.1
WD40-like Beta Propeller Repeat.
  
     0.701
SIT15172.1
Protein involved in gliding motility GldJ.
 
     0.695
Your Current Organism:
Zobellia uliginosa
NCBI taxonomy Id: 143224
Other names: ACAM 538, ATCC 14397, Agarbacterium uliginosum, CCUG 33448, CECT 4277, CIP 104808, Cellulophaga uliginosa, Cytophaga uliginosa, DSM 2061, Flavibacterium uliginosum, Flavobacterium uglinosum, Flavobacterium uliginosum, IFO 14962, JCM 21152, LMG 3809, LMG:3809, NBRC 14962, Z. uliginosa, strain ZoBell 553
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.