STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT02287.1Beta-mannosidase; Belongs to the glycosyl hydrolase 2 family. (850 aa)    
Predicted Functional Partners:
SIT02304.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.900
SIT02335.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
 
    0.807
SIT02320.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
 
    0.806
SIT02239.1
Transcriptional regulator, IclR family.
 
     0.769
SIT02382.1
Lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
    0.690
SIT02367.1
Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.671
SIT02395.1
L-rhamnose-proton symport protein (RhaT).
 
     0.655
SIS43362.1
alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.644
uxaC
D-glucuronate isomerase.
  
 
 0.639
SIS48982.1
Hypothetical protein.
  
  
 0.637
Your Current Organism:
Zobellia uliginosa
NCBI taxonomy Id: 143224
Other names: ACAM 538, ATCC 14397, Agarbacterium uliginosum, CCUG 33448, CECT 4277, CIP 104808, Cellulophaga uliginosa, Cytophaga uliginosa, DSM 2061, Flavibacterium uliginosum, Flavobacterium uglinosum, Flavobacterium uliginosum, IFO 14962, JCM 21152, LMG 3809, LMG:3809, NBRC 14962, Z. uliginosa, strain ZoBell 553
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.