STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT02486.1TonB-linked outer membrane protein, SusC/RagA family. (1180 aa)    
Predicted Functional Partners:
SIT02532.1
Starch-binding associating with outer membrane.
 
     0.940
SIT08543.1
RagB/SusD domain-containing protein.
  
 
   0.849
SIT14744.1
Starch-binding associating with outer membrane.
  
 
   0.847
SIS86432.1
Starch-binding associating with outer membrane.
  
 
   0.837
SIT05288.1
Starch-binding associating with outer membrane.
  
 
   0.832
SIT03242.1
Starch-binding associating with outer membrane.
  
 
   0.825
SIS67461.1
Starch-binding associating with outer membrane.
  
 
   0.823
SIS63082.1
Starch-binding associating with outer membrane.
  
 
   0.818
SIS48916.1
Starch-binding associating with outer membrane.
  
 
   0.813
SIS55329.1
Starch-binding associating with outer membrane.
  
 
   0.812
Your Current Organism:
Zobellia uliginosa
NCBI taxonomy Id: 143224
Other names: ACAM 538, ATCC 14397, Agarbacterium uliginosum, CCUG 33448, CECT 4277, CIP 104808, Cellulophaga uliginosa, Cytophaga uliginosa, DSM 2061, Flavibacterium uliginosum, Flavobacterium uglinosum, Flavobacterium uliginosum, IFO 14962, JCM 21152, LMG 3809, LMG:3809, NBRC 14962, Z. uliginosa, strain ZoBell 553
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.