STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN938_0180TonB-dependent receptor. (756 aa)    
Predicted Functional Partners:
BN938_0178
Rubredoxin.
       0.678
BN938_0179
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.678
BN938_1930
Putative TonB-dependent receptor.
  
    0.638
BN938_2234
Putative secreted protein.
  
     0.578
BN938_0051
Hypothetical protein.
  
     0.573
BN938_0042
Hypothetical protein.
  
     0.548
BN938_1888
Conserved hypothetical protein, putative transport protein.
  
     0.542
BN938_1573
Regulatory sensor-transducer; BlaR1/MecR1 family / TonB-dependent receptor.
 
 
 0.514
BN938_0050
D-lyxose isomerase.
  
     0.507
BN938_1357
Lysophospholipid acyltransferase.
  
    0.502
Your Current Organism:
Mucinivorans hirudinis
NCBI taxonomy Id: 1433126
Other names: ATCC BAA-2553, DSM 27344, M. hirudinis, Mucinivorans hirudinis Nelson et al. 2015, Rikenellaceae bacterium M3, Rikenellaceae bacterium M4, Rikenellaceae bacterium M6, strain M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.