STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN938_0220Co-activator of prophage gene expression IbrB. (167 aa)    
Predicted Functional Partners:
BN938_0221
Co-activator of prophage gene expression IbrA.
 
 
 0.970
BN938_2125
Permeases of the major facilitator superfamily.
  
   
 0.563
rsmG
rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.561
BN938_2054
Hypothetical protein.
  
     0.535
BN938_0223
Chromosome (plasmid) partitioning protein ParA.
  
 
 0.515
BN938_0292
Conjugative transposon protein TraA.
  
 
 0.515
BN938_0381
Conjugative transposon protein TraA.
  
 
 0.515
BN938_0565
Conjugative transposon protein TraA.
  
 
 0.515
BN938_0708
SusD family outer membrane protein.
  
 
 0.515
BN938_2316
SusD family outer membrane protein.
  
 
 0.515
Your Current Organism:
Mucinivorans hirudinis
NCBI taxonomy Id: 1433126
Other names: ATCC BAA-2553, DSM 27344, M. hirudinis, Mucinivorans hirudinis Nelson et al. 2015, Rikenellaceae bacterium M3, Rikenellaceae bacterium M4, Rikenellaceae bacterium M6, strain M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.