STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN938_08311,4-alpha-glucan branching enzyme. (434 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.778
BN938_0830
Inositol-1-monophosphatase.
     
 0.767
BN938_0863
Putative glutamate/gamma-aminobutyrate antiporter.
   
 0.716
BN938_2122
Putative glutamate/gamma-aminobutyrate antiporter.
   
 0.716
BN938_1920
Similar to glycogen synthase.
 
  
 0.666
BN938_2058
Predicted maltose transporter MalT.
 
  
 0.655
BN938_2061
SusD; Outer membrane protein.
 
  
 0.610
gltX
Glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
     
 0.600
BN938_3020
4-alpha-glucanotransferase (amylomaltase).
 
  
 0.591
BN938_2067
Neopullulanase; Belongs to the glycosyl hydrolase 13 family.
    
0.585
Your Current Organism:
Mucinivorans hirudinis
NCBI taxonomy Id: 1433126
Other names: ATCC BAA-2553, DSM 27344, M. hirudinis, Mucinivorans hirudinis Nelson et al. 2015, Rikenellaceae bacterium M3, Rikenellaceae bacterium M4, Rikenellaceae bacterium M6, strain M3
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