STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN938_1038Transcriptional regulator, AraC family. (300 aa)    
Predicted Functional Partners:
BN938_2806
Transcriptional regulator, AraC family.
 
 
 0.814
BN938_1729
Transcriptional regulator, AraC family.
 
   0.741
BN938_1854
Zinc finger domain-containing protein.
 
   0.741
BN938_2383
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.702
BN938_3004
MecR family transcriptional regulator.
 
 
 0.665
BN938_3035
Putative fumarate reductase.
 
  
 0.589
BN938_1418
NAD-dependent protein deacetylase of SIR2 family.
  
  
 0.560
BN938_3033
LacI family transcriptional regulator.
  
  
 0.495
BN938_0299
Transcriptional regulator, AraC family.
 
   0.492
BN938_0571
Hypothetical protein.
 
   0.492
Your Current Organism:
Mucinivorans hirudinis
NCBI taxonomy Id: 1433126
Other names: ATCC BAA-2553, DSM 27344, M. hirudinis, Mucinivorans hirudinis Nelson et al. 2015, Rikenellaceae bacterium M3, Rikenellaceae bacterium M4, Rikenellaceae bacterium M6, strain M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.