STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN938_1345Hypothetical protein. (339 aa)    
Predicted Functional Partners:
BN938_3024
Chaperone protein HtpG.
   
 0.734
BN938_1238
Error-prone lesion bypass DNA polymerase V (UmuC).
    
 
 0.633
BN938_1530
Aspartokinase.
   
   0.608
BN938_1346
Putative membrane transport protein.
       0.570
infA
Translation initiation factor 1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
   0.540
BN938_1344
Carboxy-terminal processing protease; Belongs to the peptidase S41A family.
     
 0.496
BN938_1165
Aspartokinase; Belongs to the aspartokinase family.
    
   0.436
rpsS
SSU ribosomal protein S19p (S15e); Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
   0.424
BN938_1481
Rod shape-determining protein RodA; Belongs to the SEDS family.
    
 
 0.410
BN938_2844
Cell division protein FtsW; Belongs to the SEDS family.
    
 
 0.410
Your Current Organism:
Mucinivorans hirudinis
NCBI taxonomy Id: 1433126
Other names: ATCC BAA-2553, DSM 27344, M. hirudinis, Mucinivorans hirudinis Nelson et al. 2015, Rikenellaceae bacterium M3, Rikenellaceae bacterium M4, Rikenellaceae bacterium M6, strain M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.