STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN938_1613Biopolymer transport exbD protein. (197 aa)    
Predicted Functional Partners:
BN938_1611
MotA/TolQ/ExbB proton channel family protein.
 
 
 0.989
BN938_1614
Hypothetical protein.
 
     0.952
BN938_1590
Ferric siderophore transport system, periplasmic binding protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.915
BN938_2584
MotA/TolQ/ExbB proton channel family protein.
 
 
 0.842
BN938_1612
Hypothetical protein.
  
    0.802
BN938_0200
Ferric siderophore transport system, periplasmic binding protein TonB.
 
 
 0.798
BN938_1573
Regulatory sensor-transducer; BlaR1/MecR1 family / TonB-dependent receptor.
 
 
 0.782
BN938_1715
Membrane protein.
  
 
 0.782
BN938_2046
Hypothetical protein.
  
   
 0.776
BN938_1520
TPR domain protein.
  
   
 0.774
Your Current Organism:
Mucinivorans hirudinis
NCBI taxonomy Id: 1433126
Other names: ATCC BAA-2553, DSM 27344, M. hirudinis, Mucinivorans hirudinis Nelson et al. 2015, Rikenellaceae bacterium M3, Rikenellaceae bacterium M4, Rikenellaceae bacterium M6, strain M3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.