STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
X808_6700Dihydroorotate dehydrogenase 1A PRK02506; Dihydroorotate dehydrogenase of Pasteurellaceae UniRef RepID=B0UTZ1_HAES2. (328 aa)    
Predicted Functional Partners:
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
 0.974
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
     
  0.900
X808_6690
Probable uracil permease of cellular organisms UniRef RepID=URAA_PASMU.
  
  
 0.759
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
  
  
 0.739
pheT
phenylalanyl-tRNA synthetase subunit beta PRK00629; Phenylalanyl-tRNA synthetase beta chain of cellular organisms UniRef RepID=SYFB_HAEDU; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.717
AHG75818.1
Allantoinase PRK08044; Allantoinase of Bacteria UniRef RepID=B8G121_DESHD.
  
 
 0.620
AHG75829.1
Amidohydrolase; Allantoinase PRK08044; Amidohydrolase of Bacteria UniRef RepID=E2P441_PASHA.
  
 
 0.620
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
 
  
 0.574
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
 0.539
metG
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.513
Your Current Organism:
Mannheimia varigena
NCBI taxonomy Id: 1433287
Other names: M. varigena USDA-ARS-USMARC-1296, Mannheimia varigena USDA-ARS-USMARC-1296
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