STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB17508.1Hypothetical protein. (281 aa)    
Predicted Functional Partners:
AKB19323.1
Hypothetical protein.
  
     0.700
AKB17509.1
Hypothetical protein.
      
0.693
AKB17215.1
Choline permease LicB.
  
     0.662
AKB19405.1
Choline permease LicB.
  
     0.661
AKB20145.1
Proline reductase for pyrrolysine biosynthesis.
 
     0.652
AKB20144.1
Pyrrolysine synthetase.
  
     0.615
AKB17409.1
Ferredoxin.
  
     0.613
AKB20146.1
Methylamine methyltransferase corrinoid protein reductive activase.
  
     0.610
AKB19127.1
Ferredoxin.
  
     0.602
pylS
Pyrrolysyl-tRNA synthetase; Catalyzes the attachment of pyrrolysine to tRNA(Pyl). Pyrrolysine is a lysine derivative encoded by the termination codon UAG.
  
     0.601
Your Current Organism:
Methanosarcina sp. WWM596
NCBI taxonomy Id: 1434103
Other names: M. sp. WWM596
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.