STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB81646.1Transcriptional regulator, Hth-3 family. (184 aa)    
Predicted Functional Partners:
AKB81645.1
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
 
 0.975
AKB81644.1
Ketoisovalerate oxidoreductase subunit VorC.
 
 
 0.824
AKB80927.1
Hypothetical protein.
  
 
 0.815
AKB81776.1
Long-chain-fatty-acid--CoA ligase.
  
 0.657
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
    
 0.628
AKB82876.1
Aspartokinase; Belongs to the aspartokinase family.
  
 
 0.622
AKB83351.1
Nicotinamide-nucleotide adenylyltransferase, NadM family.
  
 
  0.622
AKB83510.1
5'-nucleotidase.
    
 0.621
AKB81642.1
Ketoisovalerate oxidoreductase subunit VorA.
 
  
 0.613
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
    
  0.591
Your Current Organism:
Methanosarcina barkeri 3
NCBI taxonomy Id: 1434107
Other names: M. barkeri 3
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