STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB56344.1Geranylgeranyl/isoprenyl reductase. (385 aa)    
Predicted Functional Partners:
AKB56343.1
Digeranylgeranylglyceryl phosphate synthase.
 
     0.845
AKB53815.1
(S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
 
 
 0.761
AKB56345.1
Radical SAM domain protein.
     
 0.705
AKB55637.1
(S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase.
 
 
 0.695
AKB53658.1
ChlD component of cobalt chelatase involved in B12 biosynthesis.
 
  
 0.612
AKB54563.1
Putative oxidoreductase.
 
 
 0.604
AKB54850.1
Phytoene dehydrogenase.
 
 
 0.566
AKB55287.1
Hypothetical protein.
 
 
 0.562
AKB55985.1
Digeranylgeranylglyceryl phosphate synthase.
 
 
 0.560
tgtA
Archaeosine tRNA-ribosyltransferase type 1; Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family.
       0.557
Your Current Organism:
Methanosarcina barkeri MS
NCBI taxonomy Id: 1434108
Other names: M. barkeri MS
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