STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB79777.1Iron-sulfur cluster assembly ATPase protein SufC. (235 aa)    
Predicted Functional Partners:
AKB79778.1
Iron-sulfur cluster assembly protein SufB.
 
 
 0.996
AKB76751.1
Iron-sulfur cluster assembly protein SufB.
 
 0.979
AKB78465.1
Cysteine desulfurase, SufS subfamily.
 
  
 0.856
AKB80371.1
Cysteine desulfurase.
 
  
 0.844
AKB78460.1
Serine acetyltransferase; PaaD-like protein (DUF59) involved in Fe-S cluster assembly.
  
  
 0.786
AKB78197.1
Putative iron binding protein from the HesB_IscA_SufA family.
  
 
 0.703
AKB79814.1
Putative iron binding protein from the HesB_IscA_SufA family.
  
 
 0.703
AKB78456.1
Scaffold protein.
  
  
 0.681
AKB78966.1
Scaffold protein.
  
  
 0.681
AKB79890.1
Scaffold protein.
  
  
 0.681
Your Current Organism:
Methanosarcina horonobensis
NCBI taxonomy Id: 1434110
Other names: M. horonobensis HB-1 = JCM 15518, Methanosarcina horonobensis HB-1, Methanosarcina horonobensis HB-1 = JCM 15518, Methanosarcina horonobensis JCM 15518, Methanosarcina horonobensis JCM 15518 = HB-1, Methanosarcina sp. HB-1
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