STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB74708.1Putative oxidoreductase. (425 aa)    
Predicted Functional Partners:
AKB74709.1
Ferredoxin.
       0.799
AKB75849.1
ChlD component of cobalt chelatase involved in B12 biosynthesis.
 
  
 0.771
cofG
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1; Catalyzes the radical-mediated synthesis of 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) from 5-amino-5-(4-hydroxybenzyl)-6-(D- ribitylimino)-5,6-dihydrouracil; Belongs to the radical SAM superfamily. CofG family.
 
   
 0.745
AKB73458.1
Hypothetical protein.
 
  
 0.551
AKB73283.1
Archaeosine tRNA-ribosyltransferase type 2.
 
   
 0.533
AKB74873.1
Phytoene dehydrogenase.
  
     0.508
cofH-2
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2; Catalyzes the radical-mediated synthesis of 5-amino-5-(4- hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil from 5-amino-6-(D- ribitylamino)uracil and L-tyrosine.
       0.502
AKB76023.1
Benzodiazepine receptor TspO.
 
  
 0.495
cofC
2-phospho-L-lactate guanylyltransferase; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor; Belongs to the CofC family.
 
     0.475
AKB74803.1
Digeranylgeranylglycerophospholipid reductase.
 
  
 0.475
Your Current Organism:
Methanosarcina lacustris
NCBI taxonomy Id: 1434111
Other names: M. lacustris Z-7289, Methanosarcina lacustris Z-7289
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.