STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB34621.1Archaeosine tRNA-ribosyltransferase type 2. (625 aa)    
Predicted Functional Partners:
AKB38876.1
Histone acetyltransferase, ELP3 family.
 
     0.868
AKB38699.1
Phosphoserine phosphatase.
 
   
 0.824
AKB38195.1
NMD protein affecting ribosome stability and mRNA decay.
  
    0.746
AKB35439.1
Endoribonuclease Nob1.
  
    0.742
rpl29
LSU ribosomal protein L35e (L29p); Belongs to the universal ribosomal protein uL29 family.
 
  
 0.731
AKB35111.1
Replication factor-A protein 1.
  
     0.730
queE
Queuosine Biosynthesis QueE Radical SAM; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
     
 0.725
AKB35064.1
Hypothetical protein.
  
     0.723
tgtA
Archaeosine tRNA-ribosyltransferase type 1; Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family.
 
 
0.723
AKB35112.1
Glycerol dehydrogenase.
  
     0.715
Your Current Organism:
Methanosarcina siciliae
NCBI taxonomy Id: 1434118
Other names: M. siciliae C2J, Methanosarcina siciliae C2J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.