STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB36932.1Putative methanogenesis marker protein 8. (283 aa)    
Predicted Functional Partners:
AKB38841.1
Methyl coenzyme M reductase beta subunit.
 
     0.759
AKB38316.1
Putative methanogenesis marker protein 7.
 
     0.758
AKB38845.1
Methyl coenzyme M reductase alpha subunit; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.
 
     0.758
AKB38844.1
Methyl coenzyme M reductase gamma subunit.
 
     0.757
AKB38319.1
Putative methanogenesis marker protein 5.
  
     0.754
AKB35817.1
Nitrogenase-related protein.
 
     0.750
AKB38322.1
Methyl coenzyme M reductase system component A2.
  
     0.748
AKB38843.1
Methyl coenzyme M reductase operon protein C.
  
     0.746
AKB38320.1
Putative methanogenesis marker protein 6.
  
     0.744
AKB38318.1
Hypothetical protein.
  
     0.740
Your Current Organism:
Methanosarcina siciliae
NCBI taxonomy Id: 1434118
Other names: M. siciliae C2J, Methanosarcina siciliae C2J
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