STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB43452.1Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1. (298 aa)    
Predicted Functional Partners:
AKB43453.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TCDB 3.A.1.5.1.
 0.986
AKB43455.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
 
 0.983
AKB43454.1
Oligopeptide transport ATP-binding protein OppF; TCDB 3.A.1.5.1.
 
 0.974
AKB43451.1
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
  
 0.964
AKB44650.1
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
  
 0.877
AKB44412.1
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
  
 0.863
AKB43490.1
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
  
 0.860
AKB45568.1
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
  
 0.860
AKB43833.1
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
  
 0.855
AKB44476.1
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
  
 0.851
Your Current Organism:
Methanosarcina vacuolata
NCBI taxonomy Id: 1434123
Other names: M. vacuolata Z-761, Methanosarcina vacuolata Z-761
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.