STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC37624.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (331 aa)    
Predicted Functional Partners:
SMC37613.1
Transcriptional regulator, AraC family.
 
     0.922
SMC83911.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.864
SMC46678.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 0.776
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
 0.766
SMC45984.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.713
SMC37587.1
Trans-aconitate 2-methyltransferase.
       0.708
SMC51348.1
[acyl-carrier-protein] S-malonyltransferase.
  
 0.657
SMC88598.1
Peptidyl-prolyl cis-trans isomerase A (cyclophilin A).
    
 
 0.634
SMC45096.1
Hypothetical protein.
  
  
  0.604
SMC50988.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
   
 0.602
Your Current Organism:
Moheibacter sediminis
NCBI taxonomy Id: 1434700
Other names: CGMCC 1.12708, Empedobacter sp. M0116, JCM 19634, M. sediminis, Moheibacter sediminis Zhang et al. 2014, strain M0116
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