STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC42853.1Hypothetical protein. (76 aa)    
Predicted Functional Partners:
SMC42866.1
Multidrug resistance protein, MATE family.
       0.819
SMC91463.1
Hypothetical protein.
  
     0.761
SMC88458.1
Hypothetical protein.
  
     0.753
SMC72519.1
Mevalonate kinase.
  
     0.750
SMC44143.1
Hypothetical protein.
  
     0.744
SMC74740.1
Hypothetical protein.
  
     0.744
SMC72497.1
4-hydroxybenzoate polyprenyltransferase.
  
     0.733
SMC49950.1
pRiA4b ORF-3-like protein.
  
     0.728
SMC70971.1
Putative porin.
  
     0.725
SMC44864.1
Uncharacterised ACR, YkgG family COG1556.
  
     0.722
Your Current Organism:
Moheibacter sediminis
NCBI taxonomy Id: 1434700
Other names: CGMCC 1.12708, Empedobacter sp. M0116, JCM 19634, M. sediminis, Moheibacter sediminis Zhang et al. 2014, strain M0116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.