STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC45701.1Glycosyltransferase involved in cell wall bisynthesis. (430 aa)    
Predicted Functional Partners:
SMC45711.1
Membrane protein YfhO.
 
     0.763
SMC45751.1
Hypothetical protein.
       0.664
SMC45740.1
Hypothetical protein.
       0.648
SMC32598.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
  
 0.642
SMC82403.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
 
 0.564
SMC72497.1
4-hydroxybenzoate polyprenyltransferase.
  
     0.537
SMC50680.1
Cell division protein ZapA.
  
     0.515
SMC42853.1
Hypothetical protein.
  
     0.476
SMC45390.1
ZIP Zinc transporter.
  
 
   0.436
SMC61089.1
PD-(D/E)XK nuclease superfamily protein.
  
     0.426
Your Current Organism:
Moheibacter sediminis
NCBI taxonomy Id: 1434700
Other names: CGMCC 1.12708, Empedobacter sp. M0116, JCM 19634, M. sediminis, Moheibacter sediminis Zhang et al. 2014, strain M0116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.