STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC41821.1Protein of unknown function. (155 aa)    
Predicted Functional Partners:
SMC41838.1
Iron complex outermembrane recepter protein.
 
     0.911
SMC34732.1
Butirosin biosynthesis protein H, N-terminal.
   
   0.834
SMC41829.1
Hypothetical protein.
       0.601
SMC50401.1
Hypothetical protein.
  
     0.599
SMC89257.1
Protein of unknown function.
  
  
  0.531
SMC41851.1
Hypothetical protein.
       0.476
SMC58942.1
Head domain of trimeric autotransporter adhesin.
  
  
  0.463
SMC88816.1
Outer membrane receptor for ferrienterochelin and colicins.
  
     0.453
SMC66371.1
Vitamin K-dependent gamma-carboxylase.
  
  
  0.442
SMC41864.1
Hypothetical protein.
       0.438
Your Current Organism:
Moheibacter sediminis
NCBI taxonomy Id: 1434700
Other names: CGMCC 1.12708, Empedobacter sp. M0116, JCM 19634, M. sediminis, Moheibacter sediminis Zhang et al. 2014, strain M0116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.